PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627737.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 269aa    MW: 30386.1 Da    PI: 4.4872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.53e-1913101197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   + ++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg+++f   v+
  XP_013627737.1  13 FFKVF--LSETASESMAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGSHTF--EVS 99 
                     88999..666777779******9655655..899****************..99998899************************998888..666 PP

                     EE CS
              B3  96 vf 97 
                     vf
  XP_013627737.1 100 VF 101
                     65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-258106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-239106IPR015300DNA-binding pseudobarrel domain
CDDcd100179.69E-2011101No hitNo description
PROSITE profilePS5086313.73311104IPR003340B3 DNA binding domain
SMARTSM010191.2E-2213104IPR003340B3 DNA binding domain
PfamPF023621.1E-1613100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-5173252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-8173252IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSESEEEVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGLSGCKEMR AVVETVNLSD  120
ANSDEEEEEG DDDPSFDAGE DDEVSQGLCP VDSDETVSNA EVAAGFSSLE VESNPCFTTT  180
LKNRIYELLI PAIVVKEHRL TFCDRIKYID GEGIMYGAKG KWSDDRICFK GWDRICRRNR  240
LKEFDVVHCE MLHIRKKVHS IKITITRGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-201210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-118AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627737.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV52e-97REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3B4180.0A0A0D3B418_BRAOL; Uncharacterized protein
STRINGBra003130.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-97B3 family protein